Streamline Your Finances: How to Sync Stripe to QuickBooks Effortlessly

Learn about how to use third-party applications like Acodei to sync your Stripe data into QuickBooks Online.
Published on
December 1, 2023

Have you ever felt overwhelmed managing your business’s finances due to separate systems for payment processing and accounting? Say hello to a streamlined solution by learning how to sync your Stripe data to QuickBooks Online. Discover the benefits of accounting automation and advanced features that will save you time and optimize your business processes for growth. Are you ready to level up your financial management game? Let’s get started!

Key Takeaways

  • Integrate Stripe and QuickBooks Online for effortless synchronization of transactions.
  • Consider features, pricing, and user reviews when selecting an integration tool.
  • Leverage advanced reporting capabilities and customization options to optimize financial processes for business growth.

Understanding Stripe and QuickBooks Online Compatibility

Illustration of QuickBooks Online and Stripe logos merging together

In the modern business environment, companies use payment platforms such as Stripe and accounting tools like QuickBooks Online for financial management. However, they may face challenges keeping their records in sync, as these platforms lack native integration. Does this mean you’re stuck with tedious manual data entry? Think again!

Note that Stripe has provided information on syncing Stripe data to QuickBooks Desktop. That information can be found here. This article strictly covers solutions for how to integrate Stripe and QuickBooks Online.

Thankfully, third-party apps have come to the rescue, enabling seamless integration between Stripe and QuickBooks Online. Connecting your Stripe account with your QuickBooks Online account simplifies the synchronization of your Stripe transactions, promoting effective financial management and precise record-keeping. But how do you choose the right integration tool?

Selecting the Right Integration Tool

The choice of the right integration tool for linking Stripe and QuickBooks Online has a significant effect on your financial management. Factors such as reliability, cost, and customer support should be considered when evaluating a potential third party app. Further, you should assess key features offered by the app to ensure it meets your business needs.

Criteria for Choosing an Integration App

When selecting an integration app, consider the following factors:

  • Features: Look for an app that provides instant synchronization, historical data import, automated categorization, customization options, ease of use, and customer support.
  • Pricing: Consider the app’s pricing structure and how it fits your budget.
  • User reviews: Read reviews from other users to understand the app’s performance and reliability.

Scanning user reviews provides helpful information about the app’s reliability and satisfaction. A careful analysis of these factors guarantees the selection of an app that provides a smooth Stripe and QuickBooks Online integration experience.

Popular Third-Party Integrations

Several apps are available for syncing Stripe with QuickBooks Online, each with pros and cons. Some popular options include Acodei, Synder, and, which can help you connect Stripe seamlessly.

Acodei is a noteworthy choice for integrating Stripe with QuickBooks Online. It offers automated invoice sync, eliminating the manual process of creating invoices in QuickBooks for each invoice generated in Stripe. This feature saves you time and reduces the likelihood of errors. Moreover, Acodei provides payment reconciliation, a crucial feature that ensures your financial records are accurate and up-to-date. With configurable product mapping, you can customize how your Stripe products are categorized in QuickBooks Online, giving you more control over your financial data. Lastly, Acodei provides comprehensive insights into your gross revenue, allowing you to make data-driven decisions for your business.

On the other hand, Synder is another viable option that offers features similar to Acodei. However, it's worth noting that Synder comes at a higher cost than Acodei, which might be a factor to consider for small businesses or startups working on a tight budget. and PayTraQer are other alternatives you might consider. While offering integration services, they have received criticism in their reviews for their questionable reliability, user platform, and customer support. Therefore, it's essential to carefully evaluate these options based on your business needs and their respective pros and cons.

Setting Up Your Stripe QuickBooks integration

Photo of a person authorizing the integration on a computer screen

After selecting the optimal Stripe integration, the next step is to establish a connection between your Stripe and QuickBooks Online accounts. This process involves authorizing the integration and configuring sync settings to ensure seamless data transfer. Customizing these settings allows you to tailor the integration to your unique business requirements and preferences.

We will analyze in more depth the steps involved in establishing the connection.

Authorizing the Integration

To authorize the integration, you’ll need to grant the chosen app permission to access your Stripe and QuickBooks Online accounts. Typically, this requires that you connect Stripe by installing the Stripe app, along with authorizing a QuickBooks connection to your company. Once authorized, the app can access and synchronize your financial data between the two platforms. With this vital step completed, the focus can shift to configuring the sync settings.

Configuring Sync Settings

Configuring sync settings is essential in setting up the connection. You can customize settings such as transaction sync frequency, product mapping, and data fields to be synced, ensuring the integration meets your business needs. Adjusting these settings allows you to sync specific data from your Stripe account, such as customers, sales orders, invoices, payments, refunds, and fees.

Once your sync settings are configured, you’re set to start synchronizing transactions.

Synchronizing Transactions: The How-To

turn on, switch off, energy

Now that your Stripe and QuickBooks Online accounts are connected, you can start synchronizing transactions between the two platforms. To ensure accurate data transfer, you’ll need to choose between manual or automatic sync and monitor the sync status regularly. Continuous monitoring can identify and resolve any issues that emerge during the syncing process.

If you're here, you probably understand the benefit of automating this process, but let's first explore manual syncing.

Manual Data Entry vs. Automatic Sync

Manually syncing your data from Stripe to QuickBooks is a tedious task that can be done daily, weekly, or monthly. Most customers who do manual syncing use a journal entry method - taking their Stripe balance summaries and funneling different amounts to different QuickBooks accounts. Apart from not being automated, another downside to manual data processing is that you don't get the rich data you can retrieve from an integration like Acodei. For example, you can't reasonably sync over invoices for tracking A/R or track multiple products.

If you have less than 30 transactions per month, you could likely still manually enter the transactions. But at a certain point, especially when you get into the 100s or 1,000s of transactions, you will need to make the jump to automation.

Automatic sync also allows for real-time or scheduled data transfer without manual intervention, saving time and reducing the risk of errors. You can choose between manual or automatic sync based on your business needs, guaranteeing a smooth data transfer between Stripe and QuickBooks Online.

Monitoring Sync Status

Regularly monitoring the sync status between Stripe and QuickBooks Online is crucial for maintaining accurate financial records. By checking the the data flow daily or weekly, you can identify any issues, such as an unsynced Stripe payout or transaction. By addressing these issues promptly, you can ensure the accuracy of your financial data and keep your records up-to-date.

Keeping track of integration status is a critical part of the Stripe-QuickBooks Online integration. Remember, whatever integration you use is just providing an automation service. Managing your books and this Stripe integration is ultimately your responsibility.

Managing Stripe Payouts and Fees in QuickBooks Online

Photo of financial transactions being synchronized between Stripe and QuickBooks Online

Accurate recording of Stripe payouts and fees is vital for seamless financial management within QuickBooks Online, especially for Stripe customers using Stripe payments. You can maintain a clear and accurate view of your Stripe and financial data by ensuring that payouts are recorded correctly and payment processing fees are handled separately from gross revenue.

We will discuss the best practices for recording payouts and managing processing fees in QuickBooks Online.

Recording and Reconciling Payouts

To ensure a Stripe payout is accurately recorded in QuickBooks Online, tracking and matching payouts with the corresponding bank deposits is essential. When a Stripe payout occurs, apps like Acodei automatically generate a transfer or a bank deposit in QuickBooks Online, depending on your type of holding account. A bank deposit automatically reconciles and aggregates all sales receipts, refund receipts, and fees. From there, you only have to click "match" on your bank feed. It's that easy.

Handling Processing Fees

Tracking and categorizing Stripe processing fees separately from gross revenue is crucial for accurate financial management. You can handle processing fees in QuickBooks Online by creating a new expense transaction, selecting the appropriate expense account, and entering the fee amount as a negative number.

This practice allows for precise accounting of processing fees and provides a transparent view of your business finances.

Reconciling Stripe Transactions in QuickBooks Online


Reconciling Stripe transactions in QuickBooks Online is essential to maintaining accurate financial records. By following the reconciliation process and troubleshooting common issues, you can ensure that your financial data is up-to-date and accurate.

We will outline the steps involved in reconciling Stripe transactions and tackling common reconciliation problems.

Reconciliation Process

Reconciling Stripe transactions in QuickBooks Online entails matching and categorizing transactions, scrutinizing the transaction details, and rectifying any discrepancies. By regularly reconciling Stripe transactions, you can maintain an accurate view of your financial data and make data-driven business decisions.

In addition, regular reconciliation helps identify any issues or discrepancies in your financial records, allowing you to address them promptly.

Leveraging Advanced Features for Business Growth

Illustration of detailed reporting and customization options

Utilizing advanced features like detailed reporting capabilities and customization options can provide valuable insights and help optimize your business processes. By leveraging these features, you can make informed business decisions, streamline your financial management, and ultimately drive business growth.

We will discuss how these advanced features can be advantageous for your business.

Multiple Product Mapping

One incredibly powerful feature when setting up any Stripe-QuickBooks integration is product mapping. Product mapping means mapping line item sales, particularly from an invoice, to an income account of your choice.

This feature allows for more granular profit and loss statements, and gives insight into your business.  Instead of simply seeing your total revenue, you can see a breakdown of revenue by product. This can help you identify trends, like a particular product becoming more or less popular over time.

Doing product mapping in a manual process can be extremely tedious. It should be automated based on the data coming from Stripe.

Invoice Syncing

One of the significant features of a Stripe-QuickBooks integration is the ability to sync invoices. This feature significantly reduces the manual effort of creating invoices in QuickBooks for each invoice generated in Stripe, saving you time and reducing the likelihood of errors.

To sync your invoices from Stripe to QuickBooks Online, you need to enable the setting within your chosen app. Once set up, the app will automatically import all new invoices created in Stripe into QuickBooks Online, keeping your records up-to-date and consistent across both platforms.

The sync includes all the essential details of each invoice, such as the customer's name, invoice date, due date, line items, and the amount due. This ensures that your QuickBooks Online account reflects the same detailed information as your Stripe account, providing a complete picture of your invoicing and payments.

Once the invoice is synced, integrations match the payments made in Stripe to the corresponding invoices in QuickBooks Online. When a customer makes a payment in Stripe, the integration app recognizes the payment and automatically applies it to the correct invoice in QuickBooks Online.

This automatic matching of payments to invoices simplifies your accounting processes and ensures that your accounts receivable are always accurate. It eliminates the need for manual matching, which can be time-consuming and prone to errors.


In conclusion, syncing Stripe and QuickBooks Online can significantly streamline your financial management processes, saving you time and effort. By selecting the right integration tool, customizing settings, and leveraging advanced features, you can optimize your business processes for growth. Don’t let manual data entry hold your business back. Embrace the power of automation and unlock your business’s full potential.

Frequently Asked Questions

How do I add Stripe payments in Quickbooks?

To add a Stripe transaction in QuickBooks, you will need to manually generate sales receipts and bank deposits or get an integration to handle the processing of Stripe transactions for you.

Do I need a separate app to sync Stripe and QuickBooks Online?

Yes, you need a separate app to sync Stripe and QuickBooks Online as there is no native integration between them.

How can I ensure the accuracy of entries in QuickBooks Online?

To ensure the accuracy of transactions in QuickBooks Online account, check in regularly on your third party app and make sure everything is matching up.

What is a popular third party app for integrating Stripe with QuickBooks Online?

Popular third-party apps for integrating Stripe with QuickBooks Online include Acodei, PayTraQer, Synder, and, each offering unique benefits. The Stripe-QuickBooks Online integration by Acodei has many Stripe specific benefits that other competitors don't have, like included product mapping, invoice syncing, and balance transaction tracking.

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